Decarboxylative Halogenation of Heterocycles Enabled by Vanadium Haloperoxidases

Description

Despite comprising a variety of bioactive compounds that can be utilized as effective synthetic precursors, the construction of halogenated arenes often relies on hazardous reagents and conditions that pose regioselectivity issues in complex systems. Halodecarboxylation using vanadium-dependent haloperoxidases (VHPOs) has

Despite comprising a variety of bioactive compounds that can be utilized as effective synthetic precursors, the construction of halogenated arenes often relies on hazardous reagents and conditions that pose regioselectivity issues in complex systems. Halodecarboxylation using vanadium-dependent haloperoxidases (VHPOs) has emerged as a sustainable alternative for the synthesis of halogenated arenes. In the Biegasiewicz group, we recently discovered that VHPOs can furnish 3-bromooxindoles from 3-carboxyindoles through a decarboxylation event, followed by oxidation. While this tandem process was exciting, the intermediates of this process, 3- bromoindoles are independently valuable reagents, which necessitated further investigation. Herein we examine the biocatalytic access to bromoindoles for which we addressed the major challenge of undesired oxidation event. The first preventative approach acylated the indole nitrogen, resulting in 1-acetylindole-3-CO2H. This could then be subjected to optimized enzymatic bromination conditions to produce 1-acetyl-3-bromoindole in 98% yield with CiVCPO. The second preventative approach was to modify the reaction conditions, furnishing 1-methyl-3-bromoindole in 73% yield from 1-methylindole-3- CO2H with AmVBPO.

Date Created
2023-05
Agent

Biocatalytic Halocyclization of Amides Enables By Vanadium Haloperoxidases

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Description
Marine algae are a rich source of bioactive halogenated natural products. Thepresence of these marine natural products has largely been attributed to their biosynthesis by organisms in these environments through a variety of different halogenation mechanisms. One of the key contributors in

Marine algae are a rich source of bioactive halogenated natural products. Thepresence of these marine natural products has largely been attributed to their biosynthesis by organisms in these environments through a variety of different halogenation mechanisms. One of the key contributors in these halogenation processes are from the vanadium haloperoxidases (VHPOs) class of enzymes. VHPOs perform an electrophilic halogenation through the oxidation of halide ions with hydrogen peroxide as the terminal oxidant. This technique produces an electrophilic halide equivalent that can directly halogenate organic substrates. Despite the numerous known reaction capabilities of this enzyme class, their construction of intramolecular ring formation between a carbon and nitrogen atom has remained unreported. Herein, this study presents a development of a ‘new to nature’ chemical reaction for lactam synthesis. In pursuit of this type of reaction, it was discovered that wild type VHPOs (e.g., Curvularia inaequalis, Corallina officinalis, Corallina pilulifera, Acaryochloria marina) produce halogenated iminolactone compounds from acyclic amides in excellent yields and selectivity greater than 99 percent yield. The extension to chlorocyclizations will also be discussed.
Date Created
2022
Agent

Development of Iron-Photocatalyzed Decarboxylative Trifluoromethylation of Alkenes

Description

The trifluoromethyl group is an essential chemical motif in pharmaceutical and agrochemical industries. The trifluoromethyl group has similar steric bulk to a methyl group, but exhibits strongly electron withdrawing properties. As a result, a trifluoromethyl group can provide a molecule

The trifluoromethyl group is an essential chemical motif in pharmaceutical and agrochemical industries. The trifluoromethyl group has similar steric bulk to a methyl group, but exhibits strongly electron withdrawing properties. As a result, a trifluoromethyl group can provide a molecule with enhanced lipophilicity, bioavailability, and metabolic stability, which makes it a commonly used tool to tune activity of agrochemicals and pharmaceutical candidates. There are many methods to generate a new trifluoromethyl moiety, but many of these methods rely on stoichiometric metal reagents or harsh reaction conditions. One strategy to install the trifluoromethyl group under benign conditions is with photoredox catalysis. In the field of photocatalysis, iron has emerged as an alternative for precious metals due to its low cost, earth-abundance, and environmentally benign nature. Methods of trifluoromethylation utilizing iron catalysis do exist, but they often rely on expensive CF3 precursors such as Togni’s Reagent and trifluoromethyl iodide. This thesis demonstrates a method using iron photocatalysis for decarboxylative trifluoromethylation of alkenes using trifluoroacetic acid. We have successfully enabled trifluoromethylation of select methoxy-substituted benzene derivatives as well as a number of alkenes, including those bearing sulfone and ketone groups.

Date Created
2022-12
Agent

Chemoenzymatic Synthesis and Functionalization of Heterocycles

Description

The development of novel aqueous cross-coupling strategies has emerged as a rapidly expanding area of research within organic synthesis. However, many of these cross-coupling reactions require the pre-formation of an organohalide substrate, which often involves toxic halogenating reagents and harsh

The development of novel aqueous cross-coupling strategies has emerged as a rapidly expanding area of research within organic synthesis. However, many of these cross-coupling reactions require the pre-formation of an organohalide substrate, which often involves toxic halogenating reagents and harsh reaction conditions. This work details the development of a tandem halogenation/cross-coupling procedure in which an electron-rich arene or heteroarene is brominated through an enzymatic halogenation reaction catalyzed by a vanadium dependent haloperoxidase (VHPO) and then used without workup in a subsequent aqueous Suzuki cross-coupling reaction. This sequential process allows the arylated product to be accessed in a single pot from the unfunctionalized substrate via the brominated intermediate. Optimization of the enzymatic halogenation step was performed for three different substrates, resulting in the discovery of conditions for the bromination of 2,3-dihydrobenzofuran, chromane, and anisole in high yield (>95%). The scope of the reaction was then investigated for a range of electron-rich arene and heteroarene substrates. Next, Suzuki cross-coupling conditions were developed in a reaction mixture of pH 5 citrate buffer and acetonitrile and applied to the arylation of 2,3-dihydrobenzofuran utilizing an array of arylboronic acid coupling partners. Finally, the two procedures were combined to perform a tandem enzymatic halogenation/aqueous Suzuki cross-coupling of 2,3-dihydrobenzofuran to give the arylated product in 74% yield.

Date Created
2022-12
Agent

Mechanisms of Photodegradation of Fe Catalysts and Small Organic Molecules

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Description

This thesis is about how Fe catalysts can be degraded using photocatalysis and how Fe catalysts can degrade small molecules in conjunction with light. The goal of this paper is to look further into more sustainable methods of organic chemistry.

This thesis is about how Fe catalysts can be degraded using photocatalysis and how Fe catalysts can degrade small molecules in conjunction with light. The goal of this paper is to look further into more sustainable methods of organic chemistry. Many current organic chemistry practices involve the use of precious metals. Iron is a more sustainable catalyst because it is abundant and inexpensive which is important for preserving the earth and making the organic chemistry more accessible. Along the same lines, light is a renewable energy source and has demonstrated its ability to aid in reactions. Overall, the goal of this paper is to explore the more sustainable alternatives to harsh and toxic organic chemistry practices through the use of Iron and light.

Date Created
2022-05
Agent

Molecular Modification of (Iso)quinolines via Earth-Abundant Catalysis

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Description

Chemistry has always played a foundational role in the synthesis of pharmaceuticals. With the rapid growth of the global population, the health and medical needs have also rapidly increased. In order to provide drugs capable of mediating symptoms and curing

Chemistry has always played a foundational role in the synthesis of pharmaceuticals. With the rapid growth of the global population, the health and medical needs have also rapidly increased. In order to provide drugs capable of mediating symptoms and curing diseases, organic chemistry provides drug derivatives utilizing a limited number of chemical building blocks and privileged structures. Of these limited building blocks, this project explores Late–stage C–H functionalization of (iso)quinolines using abundant metal catalysis in order to achieve site-selective molecular modification.

Date Created
2022-05
Agent

Design and Isolation of a Novel Phosphine Functionalized Carbodiimide as a Versatile Precursor to Accessing Hemilabile Amidinate and Guanidinate Ligands

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Description

Amidinates and guanidinates are promising supporting ligands in organometallic and coordination chemistry, highly valued for their accessibility, tunability, and comparability with other popular anionic N-chelating hard donor ligands like β-diketiminates. By far the most powerful way to access these ligands

Amidinates and guanidinates are promising supporting ligands in organometallic and coordination chemistry, highly valued for their accessibility, tunability, and comparability with other popular anionic N-chelating hard donor ligands like β-diketiminates. By far the most powerful way to access these ligands involves direct metal-nucleophile insertion into N,N’- substituted carbodiimides. However, the majority of reported examples require the use of commercially accessible carbodiimide peptide coupling reagents with simple alkyl substituents leading to low variation in potential substituents. Presented here is the design, synthesis, and isolation of a novel N,N’-bis[3-(diphenylphosphino)propyl]carbodiimide via an Aza-Wittig reaction between two previously described air stable substrates. At room temperature, 3-(diphenylphosphanyl-borane)-propylisocyanate was added to N-(3-(diphenylphospino)propyl)-triphenylphosphinimine, leading to product formation in minutes. One-pot phosphine-borane deprotection, followed by simple filtration of the crude mixture through a small, basic silica plug using pentane and diethyl ether granted the corresponding carbodiimide in high purity and yield (over 70%), confirmed by 1H, 13C, and 31P NMR spectroscopy. In addition to accessing different central carbon substituents, modification of phosphine substituents should be easily accessible through minor variations in the synthesis. With these precursors, anionic amidinates and guanidinates capable of κ4 -N,N,P,P-coordination may be accessed. The ability of the labile phosphine arms to associate and dissociate may facilitate catalysis. Thus, this carbodiimide provides a tunable, reliable one step precursor to novel substituted amidinates and guanidinates for homogeneous transition metal catalysis.

Date Created
2022-05
Agent

Development of a HaloTag® Linker for Applications in Photobiocatalysis

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Description

The use of enzyme-catalyst interfaces is underexplored in the field of biocatalysis, particularly in studies on enabling novel reactivity of enzymes. For this thesis, the HaloTag® protein tagging platform was proposed as a bioconjugation method for a pinacol coupling reaction

The use of enzyme-catalyst interfaces is underexplored in the field of biocatalysis, particularly in studies on enabling novel reactivity of enzymes. For this thesis, the HaloTag® protein tagging platform was proposed as a bioconjugation method for a pinacol coupling reaction using lipases, as a model for novel reactivities proceeding via ketyl radical intermediates and hydrogen-bonding-facilitated redox attenuation. After an initial lipase screening of 9 lipases, one lipase (Candida rugosa) was found to perform the pinacol coupling of p-anisaldehyde under standard conditions (fluorescein and 530nm light, 3% yield). Based on a retrosynthetic analysis for the photocatalyst-incorporated HaloTag® linker, the intermediates haloamine 1 and aldehyde 6 were synthesized. Further experiments are underway or planned to complete linker synthesis and conduct pinacol coupling experiments with a bioconjugated system. This project underscores the promising biocatalytic promiscuity of lipases for performing reactions proceeding through ketyl radical intermediates, as well as the underdeveloped potential of incorporating bioengineering principles like bioconjugation into biocatalysis to overcome kinetic barriers to electron transfer and optimize biocatalytic reactions.

Date Created
2021-05
Agent

Development of a Terpene Cyclase Using Oxyanion Hole Biocatalysis

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Description

Terpene cyclizations are one of the most complex reactions that occur in nature. Scientists have found that replicating this reaction in a lab setting has proved to be immensely challenging as result of the numerous intermediates that must be controlled

Terpene cyclizations are one of the most complex reactions that occur in nature. Scientists have found that replicating this reaction in a lab setting has proved to be immensely challenging as result of the numerous intermediates that must be controlled through the cyclization process in the absence of an enzyme. This study uses commercially available lipases to conduct reactions with geraniol-derived starting materials to identify conditions for performing a terpene cyclization effectively and efficiently. Through hypothesized screening of enzymes and reaction conditions, we have identified a protocol for the successful cyclization of limonene and other geranyl-derived products.

Date Created
2021-05
Agent

Understanding the Molecular Mechanisms of TRP Channel Activity

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Description
Transient receptor potential (TRP) channels are a diverse family of polymodally gated nonselective cation channels implicated in a variety of pathophysiologies. Two channels of specific interest are transient receptor potential melastatin 8 (TRPM8) and transient receptor potential vanilloid 1 (TRPV1).
TRPM8

Transient receptor potential (TRP) channels are a diverse family of polymodally gated nonselective cation channels implicated in a variety of pathophysiologies. Two channels of specific interest are transient receptor potential melastatin 8 (TRPM8) and transient receptor potential vanilloid 1 (TRPV1).
TRPM8 is the primary cold sensor in humans and is activated by ligands that feel cool such as menthol and icilin. It is implicated to be involved in a variety of cancers, nociception, obesity, addiction, and thermosensitivity. There are thought to be conserved regions of structural and functional importance to the channel which can be identified by looking at the evolution of TRPM8 over time. Along with this, looking at different isoforms of TRPM8 which are structurally very different but functionally similar can help isolate regions of functional interest as well. Between TRP channels, the transmembrane domain is well conserved and thought to be important for sensory physiology. To learn about these aspects of TRPM8, three evolutionary constructs, the last common primate, the last common mammalian, and the last common vertebrate ancestor TRPM8 were cloned and subjected to preliminary studies. In addition to the initial ancestral TRPM8 studies, fundamental studies were initiated in method development to evaluate the use of biological signaling sequences to attempt to force non-trafficking membrane protein isoforms and biophysical constructs to the plasma membrane. To increase readout for these and other studies, a cellular based fluorescence assay was initiated. Eventual completion of these efforts will lead to better understanding of the mechanism that underlie TRPM8 function and provide enhanced general methods for ion channel studies.
Beyond TRPM8 studies, an experiment was designed to probe mechanistic features of TRPV1 ligand activation. TRPV1 is also a thermosensitive channel in the TRP family, sensing heat and vanilloid ligands like capsaicin, commonly found in chili peppers. This channel is also involved in many proinflammatory interactions and associated with cancers, nociception, and addiction. Better understanding binding interactions can lead to attempts to create therapeutics.
Date Created
2020-05
Agent