Water quality assessment is essential for maintaining healthy ecosystems and protecting human health. Data interrogation and exploratory data analysis techniques are used to analyze the spatial and temporal variability of water quality parameters, identifying correlations, and to better understand the factors that impacts microbial and chemical quality of water. The seasonal dynamics of microbiome in surface waters were investigated to identify the factors driving these dynamics. Initial investigation analyzed two decades of regional water quality data from 20 various locations in Central Arizona, USA. Leveraging advanced data science techniques, the study uncovered correlations between crucial parameters, including dissolved organic carbon (DOC), ultraviolet absorbance (UVA), and specific ultraviolet absorbance (SUVA). These findings provide foundational insights into the dynamic of overall water quality. A comprehensive 12-month surface water sample collection and study was conducted to investigate potential bias in bacterial detection using EPA approved Membrane Filtration (MF) technique. The results underscore that while MF excels in recovering bacteria of public health significance, it exhibits biases, particularly against small and spore-forming bacteria and Archaea, such as Bacilli, Mollicutes, Methylacidiphilae, and Parvarchaea. This emphasizes the importance of complementing standard microbiology approaches to mitigate technological biases and enhance the accuracy of microbial water quality testing, especially for emerging pathogens. Furthermore, a complementary study of microbial dynamics within a model drinking water distribution systems (DWDSs) using treated water from the same source water as the above study. The influence of pipe material and water temperature on the microbiome and trace element composition was investigated. The research unveiled a preferential link between pipe material and trace elements, with water temperature significantly impacting the microbiome to a higher degree than the chemical composition of water. Notably, Legionellaceae and Mycobacteriaceae were found to be prevalent in warmer waters, highlighting the substantial influence of water temperature on the microbiome, surpassing that of pipe material. These studies provide comprehensive insights into the spatial and temporal variability of water quality parameters. Analyzing microbial data in depth is crucial in detecting bacterial species within a monitoring program for adjusting operational conditions to reduce the presence of microbial pathogens and enhance the quality of drinking water.

The developing world has witnessed a rapid growth in crop production since the green revolution in the 1960s. Even though the population has almost doubled since then, food production has tripled; most of this growth can be attributed to crop research, fertilizers, infrastructure, and market development. Although the green revolution came with benefits, it has been widely criticized for its negative impact on the environment. The excessive and inappropriate use of fertilizers has led to human and livestock diseases, polluted waterways, loss of soil fertility, and soil acidity. Even though the green revolution was started to ensure food security, it has unintended consequences on human health and the surrounding environment. This dissertation focuses on the surface characteristics of graphene nanomaterials (GNMs) and their application in agriculture. Among the nutrients needed for crops, some can be easily obtained from the environment (e.g., carbon, hydrogen, oxygen, etc.), while others, like nitrogen (N), phosphorus (P), and potassium (K), often requires supplementation by fertilizers. However, conventional fertilizers have caused problems associated with soil pH changes, stunted plant growth, and disrupted beneficial microbial processes. Implementing nano-fertilizers, which can act as controlled-release fertilizers, is important. GNMs have shown some promising characteristics for the controlled release of drugs and other chemicals. Therefore, in the first part of this study, the loading capacity of the three macronutrients (N, P, and K) over GNMs of different surface chemistry was characterized. In the second part of this thesis, the effect of graphene oxide (GO) addition on wheat germination was evaluated. Rapid germination is essential for crop establishment to ensure low-cost and high-quality products and keep in check the sustainable use of resources in commercial agriculture. The results of this thesis indicated that the application of GO significantly enhanced the seed germination potential of the wheat crops. It not only increases the root weight but also improves its volume. Future work should focus on the impact of surface chemistry of GNMs on germination, which, when combined with the materials’ ability to bind nutrients, could help better guide the use of GNMs in agriculture.

Corrosion is known to have severe infrastructure integrity implications in a broad range of industries including water and wastewater treatment and reclamation. In the U.S. alone, the total losses due to corrosion in drinking water and wastewater systems can account for economic losses as high as $80 billion dollars a year. Microbially induced corrosion is a complex phenomenon which involve various phases; 1) formation of biofilms on submerged surfaces, 2) creation of micro-environmental niches associated with biofilm growth, 3) altered availability nutrients, 4) changes in the pH and oxygen concentrations. Biofilms can harbor opportunistic or pathogenic bacteria for a long time increasing the risk of pathogen exposure for the end users. The focus of this thesis research was to study the kinetics of microbially induced corrosion of various materials in water and reclaimed water systems. The specific objective was to assess the biofilms formation potential on stainless steel 304, stainless steel 316, galvanized steel, copper, cPVC, glass, carbon steel, and cast iron in water and reclaimed water systems. Experiments were conducted using bioreactor containers, each bioreactor housed four sampling boxes with eight partitions, dedicated to each material type coupon. One bioreactor was stationed at ASU, and one at Vistancia Aquifer Storage and Recovery (ASR) well; while three bioreactors were stationed at Butler facility, at pre-disinfection, post-UV and post-chlorination. From each location, one submerged sampling box was retrieved after 1, 3, 6 and 12 months. Time series of biofilm samples recovered from various types of coupons from different locations were analyzed using physical and culture-based techniques for quantification of biofilms and detection of heterotrophic plate count (HPC) bacteria, Legionella, Mycobacterium, and sulfate reducing bacteria (SRB). After one-year, galvanized steel had the highest concentration of HPC at 4.27 logs while copper had the lowest concentration of 3.08 logs of HPC. Bacterial growth data collected from the SRB tests was compiled to develop a numerical matrix using growth potential, biofilm formation potential and metal reduction potential of SRB isolates. This risk assessment matrix can be a useful tool for the water industry to evaluate the potential risk of MIC in their systems.

In the recent years, there have been massive technological advancements which have led to increased radical industrialization resulting in a significant impact on the environment. Effluents and by-products of the production processes from industries such as pharmaceutical and personal care products (PPCPs) have increased the concerns of “emerging contaminants” (ECs) in surface waters and drinking water systems. This study focuses on the treatment of emerging chemical contaminants including nitrosodimethylamine (NDMA) and 1,4-dioxane. In addition, the inactivation of microbial contaminants of concern in water including E. coli, Legionella, Mycobacterium and fungal spores were studied using the same treatment technologies. The ECs chosen are not susceptible to conventional treatment process and there still remains a need for alternate processes for their removing/remediating to ensure safe drinking water. The treatment technologies utilized were Advanced Oxidation Processes (AOP) involving UV 220 /254 nm employing an excimer lamp and a low-pressure mercury lamp with ReFLeXTM technology and peracetic acid (PAA). The main objective of this study was to develop a new alternate technology for the enhanced remediation of chemical and microorganisms of concerns in water. The specific research objectives included: 1) To study the efficacy of the UV system to treat the selected contaminants. 2) To study the effect of PAA on the remediation of the contaminants. 3) To explore a new AOP technology under dynamic flow conditions with varying UV and PAA doses. 4) To determine optimized UV and PAA dosages to obtain enhanced remediation of the selected contaminant under dynamic flow conditions to better mimic the real-world applications.

The waterways in the United States are polluted by agricultural, mining, and industrial activities. Recovery of valuable materials, such as energy and nutrients, from these waste streams can improve the economic and environmental sustainability of wastewater treatment. A number of state-of-the-art anaerobic bioreactors have promise for intensified anaerobic biological treatment and energy recovery, but they have drawbacks. The drawbacks should be overcome with a novel anaerobic biological wastewater treatment process: the anaerobic biofilm membrane bioreactor (AnBfMBR). This research works aims to advance key components of the AnBfMBR. The AnBfMBR is a hybrid suspended growth and biofilm reactor. The two main components of an AnBfMBR are plastic biofilm carriers and membranes. The plastic biofilm carriers provide the surface onto which the biofilms grow. Membranes provide liquid-solid separation, retention of suspended biomass, and a solids-free effluent. Introducing sufficient surface area promotes the biofilm accumulation of slow-growing methanogens that convert volatile fatty acids into methane gas. Biofilms growing on these surfaces will have a mixed culture that primarily consists of methanogens and inert particulate solids, but also includes some acetogens. Biomass that detaches from biofilms become a component of the suspended growth. A bench-scale AnBfMBR was designed by the AnBfMBR project team and constructed by SafBon Water Technology (SWT). The primary objective of this thesis project was to evaluate the ability of plastic biofilm carriers to minimize ceramic-membrane fouling in the AnBfMBR setting. A systematic analysis of mixing for the bench-scale AnBfMBR was also conducted with the plastic biofilm carriers. Experiments were conducted following a ‘run to failure’ method, in which the ceramic membranes provide filtration, and the time it takes to reach a ‘failure transmembrane pressure (TMP)’ was recorded. The experiments revealed two distinct trends. First, the time to failure TMP decreased as mixed liquor suspended solids concentration (MLSS) concentration increased. Second, increasing the carrier fill extend the time to failure, particularly for higher MLSS concentrations. Taken together, the experiments identified an optimized “sweet spot” for the AnBfMBR: an operating flux of 0.25-m/d, a failure TMP of 0.3-atm pressure, MLSS of 5,000 – 7,500 mg/L, and 40% carrier fill.

The ongoing COVID pandemic has opened the doors for the development of effective surface disinfection technologies. UV technology is one of the most effective technique to be used in combination with different photocatalytic agents such as Titanium Dioxide (TiO2) for microbial inactivation. There are many bacteria and viruses which have the potential to infect humans via surface-oral/inhalation pathway. Thus, it is important to evaluate the effectiveness of these techniques used to inactivate microorganisms to minimize environmental transmission. UV light directly acts on bacteria and viruses by damaging their nucleic acids and protein structures. TiO2 acts as a photocatalyst, generates hydroxyl radicals under UV, leading to enhanced inactivation efficacy. This study focuses on the impact of UVC light at 254 nm wavelength in combination with spray formulations with TiO2 for the inactivation of E. coli (exposure times of 1, 5 and 10 minutes) and bacteriophages P22 (exposure times of 5 and 10 minutes) and MS2 (exposure times of 1 and 5 minutes). This study includes tests that explored the long-lasting impact of spray formulations on non-porous surface. Minimal inactivation of ~ 0.15 log inactivation of E. coli was resulted using TiO¬2 alone but when UV was added to the procedure on average 3 log inactivation was achieved. It was noted that MS2 was found to be more susceptible to UV as compared to P22 due to its higher inactivation rate. The spray formulation homogeneity is a critical factor in consistent microbial inactivation. In addition, the UV intensity of the handheld device is an important factor for total disinfection. However, the combined spray formulation and UV technology is an effective method of surface disinfection.

The high levels of pollution associated with mining activities necessitate more efficient methods of treating mining effluent before it is released into the environment. Phosphate -mining wastewater contains high concentrations of sulfate that can be removed and recovered as elemental sulfur (S0), which is a useful resource. The Membrane Biofilm Reactor (MBfR) uses gas-transfer membranes for the delivery of gases to microorganisms that carry out oxidation-reduction reactions that lead to the breakdown of contaminants. The two main microorganisms involved in the treatment of sulfate wastewater using the MBfR are sulfate-reducing bacteria (SRB) for the reduction of sulfate into sulfide and sulfur-oxidizing bacteria (SOB) for the oxidation of sulfide into S0. In this work, the kinetic processes involved in sulfate reduction and sulfide oxidation for SRB and SOB were modeled using the steady-state biofilm model and mass balances on a completely mixed biofilm reactor. The model results identified trends of substrate removal, biofilm accumulation, and hydraulic retention time (HRT) for the design of the sulfate-treatment system. The HRT required for 97.5% sulfate removal was about 0.1 d and that for 97.5% sulfide removal about 0.2 d. Higher levels of biofilm accumulation occurred with sulfide oxidation due to the larger biomass yield of the SOB. The needed delivery of H2 gas required for sulfate reduction and O2 gas for sulfide oxidation, as well as the alkalinity changes, also were determined based on the removal levels.

Nitrogen removal and energy reduction in wastewater treatment are shared goals. Approaches to achieve those goals include the techniques of shortcut nitrogen removal utilizing nitrite shunt, biocatalyst, nitritation, deammonification, and simultaneous nitrification-denitrification. The practice of those techniques is newer in the industry of wastewater treatment but continues to develop, along with the understanding of the biological and chemical activities that drive those processes. The kinetics and stoichiometry of traditional and shortcut nitrogen removal reactions are generally well understood to date. However, the thermodynamics of those processes are complex and deserve additional research to better understand the dominant factors that drive cell synthesis. Additionally, the implementation of nitrogen shortcut techniques can reduce the footprint of wastewater treatment processes that implement nitrogen removal by approximately 5 percent and can reduce operating costs by between 12 and 26 percent annually. Combined, nitrogen shortcut techniques can contribute to significant reduction in the long-term cost to operate, due to lower energy and consumable requirements, fast reaction times resulting in shorter solids retention times, and improvement efficiency in nitrogen removal from wastewater. This dissertation explores and defines the dominant factors that contribute to the success of efficiencies in traditional and shortcut nitrogen removal techniques, focusing on the natural microbiological processes. The culmination of these efforts was used to develop decision matrices to promote consideration of nitrogen shortcut techniques by practitioners during conceptual planning and design of wastewater treatment facilities.

De facto potable reuse (DFR) occurs when surface water sources at drinking water treatment plants (DWTPs) contain treated effluents from upstream wastewater treatment plants (WWTPs). Contaminants of emerging concerns (CECs) originate from treated effluents (e.g., unregulated disinfection by-products, pathogenic microorganisms as Cryptosporidium oocyst, Giardia cyst, and Norovirus) can be present in surface water and pose human health risks linked to CECs. Previously developed De facto Reuse Incidence in our Nations Consumable Supply (DRINCS) model predicted DFR for the national largest DWTPs that serve >10,000 people (N = 2,056 SW intakes at 1,210 DWTPs). The dissertation aims to quantify DFR at all surface water intakes for smaller DWTPs serving ≤10,000 people across the United States and develop a programmed ArcGIS tool for proximity analysis between upstream WWTPs and DWTPs. The tested hypothesis is whether DWTPs serving ≤10,000 people are more likely to be impacted by DFR than larger systems serving > 10,000 people.The original DRINCS model was expanded to include all smaller DWTPs (N = 6,045 SW intakes at 3,984 DWTPs) in the U.S. First, results for Texas predicted that two-thirds of all SW intakes were impacted by at least one WWTP upstream. The level of DFR at SW intakes in Texas ranged between 1% to 20% under average flow and exceeded 90% during mild droughts. Smaller DWTPs in Texas had a higher frequency of DFR than larger systems while < 10% of these DWTPs employed advanced technology (AT) capable of removing CECs. Second, nationally over 40% of surface water intakes at all DWTPs were impacted by DFR under average flow (2,917 of 6,826). Smaller DWTPs had a higher frequency (1,504 and 1,413, respectively) of being impacted by upstream WWTP discharges than larger DWTPs. Third, the difference in DFR levels at smaller versus larger DWTPs was statistically unclear (t-test, p = 0.274). Smaller communities could have high risks to CECs as they rely on surface water from lower-order streams impacted by DFR. Furthermore, smaller DWTPs lack more than twice as advanced unit processes as larger DWTPs with 52.1% and 23%, respectively. DFR levels for DWTPs serving > 10,000 people were statistically higher on mid-size order streams (3, 5, and 8) than those for smaller DWTPs. Finally, DWTPs serving > 10,000 people could pose risks to a population impacted by DFR > 1% as 40 times as those served by smaller DWTPs with 71 million and 1.7 million people, respectively. The total exposed population to risks of CECs served by DWTPs impacted by upstream WWTP discharges (DFR >10%) was estimated at 12.3 million people in the United States. Future studies can use DRINCS results to conduct an epidemiological risk assessment for impacted communities and identify communities that would benefit from advanced technology to remove CECs.

Water reuse and nutrient recovery are long-standing strategies employed in agricultural systems. This is especially true in dry climates where water is scarce, and soils do not commonly contain the nutrients or organic matter to sustain natural crop growth. Agriculture accounts for approximately 70% of all freshwater withdrawals globally. This essential sector of society therefore plays an important role in ensuring water sources are maintained and that the food system can remain resilient to dwindling water resources. The purpose of this research is to quantify the benefits of organic residuals and reclaimed water use in agriculture in arid environments through the development of a systematic review and case study. Data from the systematic review was extracted to be applied to a case study identifying the viability and benefits of organic residuals on arid agriculture. Results show that the organic residuals investigated do have quantitative benefits to agriculture such as improving soil health, reducing the need for conventional fertilizers, and reducing irrigation needs from freshwater sources. Some studies found reclaimed water sources to be of better quality than local freshwater sources due to environmental factors. Biosolids and manure are the most concentrated of the organic residuals, providing nutrient inputs and enhancing long-term soil health. A conceptual model is presented to demonstrate the quantitative benefits of using a reclaimed water source in Pinal County, Arizona on a hypothetical crop of cotton. A goal of the model is to take implied nutrient inputs from reclaimed water sources and quantify them against standard practice of using irrigated groundwater and conventional fertilizers on agricultural operations. Pinal County is an important case study area where farmers are facing cuts to their water resources amid a prolonged drought in the Colorado River Basin. The model shows that a reclaimed water source would be able to offset all freshwater and conventional fertilizer use, but salinity in reclaimed water sources would force a need for additional irrigation in the form of a large leaching fraction. This review combined with the case study demonstrate the potential for nutrient and water reuse, while highlighting potential barriers to address.