Water quality assessment is essential for maintaining healthy ecosystems and protecting human health. Data interrogation and exploratory data analysis techniques are used to analyze the spatial and temporal variability of water quality parameters, identifying correlations, and to better understand the factors that impacts microbial and chemical quality of water. The seasonal dynamics of microbiome in surface waters were investigated to identify the factors driving these dynamics. Initial investigation analyzed two decades of regional water quality data from 20 various locations in Central Arizona, USA. Leveraging advanced data science techniques, the study uncovered correlations between crucial parameters, including dissolved organic carbon (DOC), ultraviolet absorbance (UVA), and specific ultraviolet absorbance (SUVA). These findings provide foundational insights into the dynamic of overall water quality. A comprehensive 12-month surface water sample collection and study was conducted to investigate potential bias in bacterial detection using EPA approved Membrane Filtration (MF) technique. The results underscore that while MF excels in recovering bacteria of public health significance, it exhibits biases, particularly against small and spore-forming bacteria and Archaea, such as Bacilli, Mollicutes, Methylacidiphilae, and Parvarchaea. This emphasizes the importance of complementing standard microbiology approaches to mitigate technological biases and enhance the accuracy of microbial water quality testing, especially for emerging pathogens. Furthermore, a complementary study of microbial dynamics within a model drinking water distribution systems (DWDSs) using treated water from the same source water as the above study. The influence of pipe material and water temperature on the microbiome and trace element composition was investigated. The research unveiled a preferential link between pipe material and trace elements, with water temperature significantly impacting the microbiome to a higher degree than the chemical composition of water. Notably, Legionellaceae and Mycobacteriaceae were found to be prevalent in warmer waters, highlighting the substantial influence of water temperature on the microbiome, surpassing that of pipe material. These studies provide comprehensive insights into the spatial and temporal variability of water quality parameters. Analyzing microbial data in depth is crucial in detecting bacterial species within a monitoring program for adjusting operational conditions to reduce the presence of microbial pathogens and enhance the quality of drinking water.

Megapolitan cities have emerged due to unprecedented urban migration. These changes strain urban resources, especially water distribution and treatment systems. The recent rise of Legionella cases linked to water distribution systems highlights this issue.Bacterial growth and biofilm formation are influenced by factors, such as type and concentration of residual disinfectant, pipe material, water temperature. Experiments were conducted in identical model water distribution systems (WDSs) constructed of three different pipe materials: galvanized steel, copper, and cross-linked polyethylene (PEX) operated under a continuous flow rate of 15 L/min. Each model WDS includes 11 steel coupons screwed to the water distribution pipes. City of Tempe (Arizona) municipal water was used in the experimentation, with no nutrients added. Following biofilm growth, coupons were removed and processed by scrubbing biofilm into phosphate-buffered saline (PBS). Reasoner's 2A (R2A), Trypticase Soy Agar (TSA), Brilliant, and buffered charcoal yeast extract (BCYE) agar media were used to examine biofilm samples for heterotrophic plate counts (HPC), metabolically active bacteria, E coli, and Legionella. Simultaneously, water samples from the reservoirs of model WDSs were also collected and examined for the same bacteria.Next, an electrochlorination cell maintained free chlorine residuals in unheated PEX and copper model WDSs. These two systems maintained free chlorine residuals for one week and evaluated biofilm and bacterial kinetics. Higher water temperature increased biofilm development. Bacterial counts in biofilms were higher on new (fresh) coupons compared to the old coupons. Heterotrophic and metabolically active bacteria behaved similarly. Only control and heating systems in copper water reservoirs have Legionella spp. Biofilms formed less on copper systems than steel and PEX systems. Initially, PEX had more HPC than copper. After electrochlorination, HPC concentration in the PEX system rapidly declined to non-detect, whereas in the copper system dropped to 0.54 log CFU/mL. Thus, higher temperature increases biofilm growth on all pipe materials and reservoirs bacterial concentration. Electrochlorination is a potential biofilm and microbial disinfection method. This thesis topic investigated how these parameters affect the model distribution system bacterial populations and biofilm growth.

Corrosion is known to have severe infrastructure integrity implications in a broad range of industries including water and wastewater treatment and reclamation. In the U.S. alone, the total losses due to corrosion in drinking water and wastewater systems can account for economic losses as high as $80 billion dollars a year. Microbially induced corrosion is a complex phenomenon which involve various phases; 1) formation of biofilms on submerged surfaces, 2) creation of micro-environmental niches associated with biofilm growth, 3) altered availability nutrients, 4) changes in the pH and oxygen concentrations. Biofilms can harbor opportunistic or pathogenic bacteria for a long time increasing the risk of pathogen exposure for the end users. The focus of this thesis research was to study the kinetics of microbially induced corrosion of various materials in water and reclaimed water systems. The specific objective was to assess the biofilms formation potential on stainless steel 304, stainless steel 316, galvanized steel, copper, cPVC, glass, carbon steel, and cast iron in water and reclaimed water systems. Experiments were conducted using bioreactor containers, each bioreactor housed four sampling boxes with eight partitions, dedicated to each material type coupon. One bioreactor was stationed at ASU, and one at Vistancia Aquifer Storage and Recovery (ASR) well; while three bioreactors were stationed at Butler facility, at pre-disinfection, post-UV and post-chlorination. From each location, one submerged sampling box was retrieved after 1, 3, 6 and 12 months. Time series of biofilm samples recovered from various types of coupons from different locations were analyzed using physical and culture-based techniques for quantification of biofilms and detection of heterotrophic plate count (HPC) bacteria, Legionella, Mycobacterium, and sulfate reducing bacteria (SRB). After one-year, galvanized steel had the highest concentration of HPC at 4.27 logs while copper had the lowest concentration of 3.08 logs of HPC. Bacterial growth data collected from the SRB tests was compiled to develop a numerical matrix using growth potential, biofilm formation potential and metal reduction potential of SRB isolates. This risk assessment matrix can be a useful tool for the water industry to evaluate the potential risk of MIC in their systems.

In the recent years, there have been massive technological advancements which have led to increased radical industrialization resulting in a significant impact on the environment. Effluents and by-products of the production processes from industries such as pharmaceutical and personal care products (PPCPs) have increased the concerns of “emerging contaminants” (ECs) in surface waters and drinking water systems. This study focuses on the treatment of emerging chemical contaminants including nitrosodimethylamine (NDMA) and 1,4-dioxane. In addition, the inactivation of microbial contaminants of concern in water including E. coli, Legionella, Mycobacterium and fungal spores were studied using the same treatment technologies. The ECs chosen are not susceptible to conventional treatment process and there still remains a need for alternate processes for their removing/remediating to ensure safe drinking water. The treatment technologies utilized were Advanced Oxidation Processes (AOP) involving UV 220 /254 nm employing an excimer lamp and a low-pressure mercury lamp with ReFLeXTM technology and peracetic acid (PAA). The main objective of this study was to develop a new alternate technology for the enhanced remediation of chemical and microorganisms of concerns in water. The specific research objectives included: 1) To study the efficacy of the UV system to treat the selected contaminants. 2) To study the effect of PAA on the remediation of the contaminants. 3) To explore a new AOP technology under dynamic flow conditions with varying UV and PAA doses. 4) To determine optimized UV and PAA dosages to obtain enhanced remediation of the selected contaminant under dynamic flow conditions to better mimic the real-world applications.

The ongoing COVID pandemic has opened the doors for the development of effective surface disinfection technologies. UV technology is one of the most effective technique to be used in combination with different photocatalytic agents such as Titanium Dioxide (TiO2) for microbial inactivation. There are many bacteria and viruses which have the potential to infect humans via surface-oral/inhalation pathway. Thus, it is important to evaluate the effectiveness of these techniques used to inactivate microorganisms to minimize environmental transmission. UV light directly acts on bacteria and viruses by damaging their nucleic acids and protein structures. TiO2 acts as a photocatalyst, generates hydroxyl radicals under UV, leading to enhanced inactivation efficacy. This study focuses on the impact of UVC light at 254 nm wavelength in combination with spray formulations with TiO2 for the inactivation of E. coli (exposure times of 1, 5 and 10 minutes) and bacteriophages P22 (exposure times of 5 and 10 minutes) and MS2 (exposure times of 1 and 5 minutes). This study includes tests that explored the long-lasting impact of spray formulations on non-porous surface. Minimal inactivation of ~ 0.15 log inactivation of E. coli was resulted using TiO¬2 alone but when UV was added to the procedure on average 3 log inactivation was achieved. It was noted that MS2 was found to be more susceptible to UV as compared to P22 due to its higher inactivation rate. The spray formulation homogeneity is a critical factor in consistent microbial inactivation. In addition, the UV intensity of the handheld device is an important factor for total disinfection. However, the combined spray formulation and UV technology is an effective method of surface disinfection.

Factors affecting biofilm development, specifically the materials of the pipe, were investigated. Two laboratory scale bioreactor systems were constructed to study biofilm formations: a pipe loop bioreactor with continuous flow at 10.1 liters per minute (LPM), and a tank bioreactor under stagnant conditions with a minimal flow of 0.0095 LPM. The continuous flow bioreactors were constructed using cross-linked polyethylene (PEX), copper, and galvanized steel pipes. The tank bioreactors consisted of glass chambers containing coupons made from the pipe materials, as well as glass microscope slides. Municipality tap water was used in the experimentation, with no nutrients added. Legionella pneumophila was spiked into all the pipe loop bioreactors, and only in one tank bioreactor. Detection of heterotrophic bacteria, coliforms and Legionella using tryptic soy agar (TSA), Brilliance, and buffered yeast charcoal extract (BYCE), respectively. Over ten weeks, biofilms were developed on PEX, copper, and steel, in the pipe loop bioreactors and the tank bioreactors. Heterotrophic bacteria were detected in all systems; however, no coliforms were detected, and Legionella pneumophila was only detected on a coupon in the copper pipe loop bioreactor, as measured by bacterial concentration on test materials. In the tank bioreactors, biofilms developed the most rapidly on PEX, followed by galvanized steel, and finally copper. Out of the four materials, copper had the lowest bacterial growth, which can be ascribed to the bactericidal impact of copper ions on the bacterial cells attaching to the copper surface. After biofilm aging, higher bacterial colonization on copper and accumulation of dead bacterial layer on the surface may act as a protective barrier against copper ions. Bacterial densities in the biofilm reached a high concentration of 1.40 x 105 CFU/cm2 on the PEX pipe loop bioreactor, and 1.05 x 104 CFU/cm2in the PEX coupon in the tank bioreactors. Comparing the turbulent conditions in the pipe loop bioreactors to the stagnant conditions in the tank bioreactor, showed that biofilms formed more rapidly under stagnant conditions, but in larger quantities under turbulent conditions.

Nitrogen removal and energy reduction in wastewater treatment are shared goals. Approaches to achieve those goals include the techniques of shortcut nitrogen removal utilizing nitrite shunt, biocatalyst, nitritation, deammonification, and simultaneous nitrification-denitrification. The practice of those techniques is newer in the industry of wastewater treatment but continues to develop, along with the understanding of the biological and chemical activities that drive those processes. The kinetics and stoichiometry of traditional and shortcut nitrogen removal reactions are generally well understood to date. However, the thermodynamics of those processes are complex and deserve additional research to better understand the dominant factors that drive cell synthesis. Additionally, the implementation of nitrogen shortcut techniques can reduce the footprint of wastewater treatment processes that implement nitrogen removal by approximately 5 percent and can reduce operating costs by between 12 and 26 percent annually. Combined, nitrogen shortcut techniques can contribute to significant reduction in the long-term cost to operate, due to lower energy and consumable requirements, fast reaction times resulting in shorter solids retention times, and improvement efficiency in nitrogen removal from wastewater. This dissertation explores and defines the dominant factors that contribute to the success of efficiencies in traditional and shortcut nitrogen removal techniques, focusing on the natural microbiological processes. The culmination of these efforts was used to develop decision matrices to promote consideration of nitrogen shortcut techniques by practitioners during conceptual planning and design of wastewater treatment facilities.

“Airborne dispersal of microorganisms influences their biogeography, gene flow, atmospheric processes, human health and transmission of pathogens that affect humans, plants and animals” (Alsved et al., 2018). Many airborne pathogens cause diseases, such as Legionnaires disease, which is a type of pneumonia caused due to Legionella. Since the first report of a Legionella outbreak in 1976, or reports of Non – tuberculous Mycobacterium (NTM) outbreaks in hospital and healthcare settings by the CDC, it is significant to understand the behavior, occurrence and persistence of opportunistic pathogenic aerosols in the atmosphere. This study comprises a literature review and experimental work on airborne dispersion of 4 microorganisms – E. coli, Legionella pneumophila, Mycobacterium phlei and bacteriophage P22. The literature review summarizes their characteristics, their potential sources, disease outbreaks, collection and detection methodologies, environmental conditions for their growth and survival and few recommendations for reducing potential outbreaks. Aerosolization of each of these microorganisms was carried out separately in a closed environment using a spray gun and a nebulizer. The spraying time consisted of 1 sec, 5secs or 10secs, from one end of a chamber, and collecting air sample from the other end of the chamber, using a microbial air sampler. The air sample collection was performed to understand their transport, dispersion and reduction in air. Legionella showed a log reduction of ~4 using spray gun and ≤0.6 using nebulizer, whereas Mycobacterium showed a log reduction of ~4.5 using spray gun and ≤0.7 using nebulizer, respectively. Bacteriophage P22 on the other hand showed a 4 log reduction using spray gun and ≤1.4 using the nebulizer. This shows that aerosolization of microorganisms depends on its cell structure, size and survivability. Legionella follows the air – to – water transmission route, and Mycobacterium is hydrophobic, due to which their aerosols are more stable and active, than E. coli. Other environmental properties such as relative humidity and temperature impact the transport and dispersion of microorganisms in air.

The experiments in this study validated the aerosolization and transport of Legionella, Mycobacterium and bacteriophage P22 in a closed environment over time. In general, microbial concentration collected in air increased with aerosolization time of the test water. On the other hand, their concentration significantly decreased as elapsed time progressed after aerosolization, due to settling effect of larger particles and potential reduction due to inactivation of bacterial and viruses in the air.

The impact of physical/chemical properties of gray water on microbial inactivation in gray water using chlorine was investigated through creating artificial gray water in lab, varying specific components, and then measuring microbial inactivation. Gray water was made through taking autoclaved nanopure water, and increasing the concentration of surfacants, the turbidity, the concentration of organic content, and spiking E. coli grown in tryptic soy broth (TSB); chlorine was introduced using Clorox Disinfecting Bleach2. Bacteria was detected using tryptic soy agar (TSA), and E. coli was specifically detected using the selective media, brilliance. The log inactivation of bacteria detected using TSA was shown to be inversely related to the turbidity of the solution. Complete inactivation of E. coli concentrations between 104-105 CFU/100 ml in gray water with turbidities between 10-100 NTU, 0.1-0.5 mg/L of humic acid, and 0.1 ml of Dawn Ultra, was shown to occur, as detected by brilliance, at chlorine concentrations of 1-2 mg/L within 30 seconds. These result in concentration time (CT) values between 0.5-1 mg/L·min. Under the same gray water conditions, and an E. coli concentration of 104 CFU/100 ml and a chlorine concentration of 0.01 mg/L, complete inactivation was shown to occur in all trials within two minutes. These result in CT values ranging from 0.005 to 0.02. The turbidity and humic acid concentration were shown to be inversely related to the log inactivation and directly related to the CT value. This study shows that chlorination is a valid method of treatment of gray water for certain irrigation reuses.

Turbidity is a known problem for UV water treatment systems as suspended particles can shield contaminants from the UV radiation. UV systems that utilize a reflective radiation chamber may be able to decrease the impact of turbidity on the efficacy of the system. The purpose of this study was to determine how kaolin clay and gram flour turbidity affects inactivation of Escherichia coli (E. coli) when using a UV system with a reflective chamber. Both sources of turbidity were shown to reduce the inactivation of E. coli with increasing concentrations. Overall, it was shown that increasing kaolin clay turbidity had a consistent effect on reducing UV inactivation across UV doses. Log inactivation was reduced by 1.48 log for the low UV dose and it was reduced by at least 1.31 log for the low UV dose. Gram flour had a similar effect to the clay at the lower UV dose, reducing log inactivation by 1.58 log. At the high UV dose, there was no change in UV inactivation with an increase in turbidity. In conclusion, turbidity has a significant impact on the efficacy of UV disinfection. Therefore, removing turbidity from water is an essential process to enhance UV efficiency for the disinfection of microbial pathogens.