The Pathways of Distinction Analysis (PoDA) program calculates relationships between a given group of genes contained within a pathway, and a disease state. It was used here to investigate liver cancer, and to explore how genetic variability may contribute to the different rates of development of the disease in males and females. The goal of the study was to identify germline variation that differs by sex in hepatocellular carcinoma. Using the program, multiple pathways and genes were identified to have significant differences in their relationship to liver cancer in males and females. In animal studies, the genes which were identified using the PoDA analysis have been shown to impact liver cancer, often with different results for males and females. While these genes are often the focus in animal models, they are absent from current Genome Wide Association Studies (GWAS) catalogs for humans. By working to bridge the results of animal studies and human studies, the results help to identify the causes of liver cancer, and more specifically, the reason the disease affects males at much higher rates. The differences in pathways identified to be significant for the two sexes indicate the germline variance may play sex-specific roles in the development of hepatocellular carcinoma. Additionally, these results reinforce the capacity of the PoDA analysis to identify genes that may be missed by more traditional GWAS methods. This study lays the groundwork for further investigations into the identified genes and pathways, and how they behave differently within males and females.

Climate change has the potential to reduce the amount of land that is suitable for crop growth. Such changes may cause food shortages, which would most likely disproportionately affect the poorest regions of the world. While GMO crops showed potential to increase crop yield and agricultural efficiency, significant public pushback has led to a search for alternative methods to generate similar results. Compounds produced by bacteria, such as 2,3-butanediol, offer a potential way to change the phenotypes of plants without the deliberate genomic changes involved in the development of GMOs which are often the subject of great controversy. These compounds influence how plants grow and function. Through precise application, the compounds could be used to improve crop yield and stress tolerance. While these effects are not completely understood, they may be due to changes in transcription and translation of certain proteins, the microbiome surrounding the plants and its interactions with the compounds, or other unknown factors. The compound 2,3-butanediol appears to increase biomass, lead to larger root systems and more root hairs, and increase germination rates in a variety of plants. All these traits are favorable for producing higher yields and enduring stress conditions. The phenotypes induced by this compound are similar to plants engineered to over express a type I proton pyrophosphatase. Plants treated with 2,3-butanediol offer a potential option to achieve the benefits of GMO crops without the attached social stigma.